How to use the package? | Passing the function PCMInfoCpp as a metaI argument of PCMLik and/or PCMCreateLikelihood | Passing the meta-information object returned by PCMInfoCpp as a metaI argument of PCMLik and PCMCreateLikelihood
Package: PCMBaseCpp 0.1.12
PCMBaseCpp: Fast Likelihood Calculation for Phylogenetic Comparative Models
Provides a C++ backend for multivariate phylogenetic comparative models implemented in the R-package 'PCMBase'. Can be used in combination with 'PCMBase' to enable fast and parallel likelihood calculation. Implements the pruning likelihood calculation algorithm described in Mitov et al. (2020) <doi:10.1016/j.tpb.2019.11.005>. Uses the 'SPLITT' C++ library for parallel tree traversal described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.
Authors:
PCMBaseCpp_0.1.12.tar.gz
PCMBaseCpp_0.1.12.zip(r-4.7)PCMBaseCpp_0.1.12.zip(r-4.6)PCMBaseCpp_0.1.12.zip(r-4.5)
PCMBaseCpp_0.1.12.tgz(r-4.6-x86_64)PCMBaseCpp_0.1.12.tgz(r-4.6-arm64)PCMBaseCpp_0.1.12.tgz(r-4.5-x86_64)PCMBaseCpp_0.1.12.tgz(r-4.5-arm64)
PCMBaseCpp_0.1.12.tar.gz(r-4.7-arm64)PCMBaseCpp_0.1.12.tar.gz(r-4.7-x86_64)PCMBaseCpp_0.1.12.tar.gz(r-4.6-arm64)PCMBaseCpp_0.1.12.tar.gz(r-4.6-x86_64)
PCMBaseCpp_0.1.12.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
PCMBaseCpp/json (API)
| # Install 'PCMBaseCpp' in R: |
| install.packages('PCMBaseCpp', repos = c('https://venelin.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/venelin/pcmbasecpp/issues
Datasets:
- benchmarkData - Data for performing a benchmark
- benchmarkResults - Results from running a performance benchmark on a personal computer including the time for parameter transformation
- benchmarkResultsNoTransform - Results from running a performance benchmark on a personal computer excluding the time for parameter transformation
Last updated from:0d4b4c99e7. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 291 | ||
| linux-devel-x86_64 | OK | 290 | ||
| source / vignettes | OK | 312 | ||
| linux-release-arm64 | OK | 280 | ||
| linux-release-x86_64 | OK | 277 | ||
| macos-release-arm64 | OK | 243 | ||
| macos-release-x86_64 | OK | 438 | ||
| macos-oldrel-arm64 | OK | 159 | ||
| macos-oldrel-x86_64 | OK | 334 | ||
| windows-devel | OK | 269 | ||
| windows-release | OK | 300 | ||
| windows-oldrel | OK | 315 | ||
| wasm-release | OK | 133 |
Exports:BenchmarkRvsCppMiniBenchmarkRvsCppPCMBaseCppIsADevReleasePCMInfoCppPCMParamGetFullVectorPCMTreePreorderCpp
Dependencies:abindapeclicpp11data.tabledigestexpmfarverggplot2gluegtableisobandlabelinglatticelifecycleMatrixmvtnormnlmePCMBaseR6RColorBrewerRcppRcppArmadillorlangS7scalesvctrsviridisLitewithrxtable
